# Tcl autoload index file, version 2.0
# This file is generated by the "auto_mkindex" command
# and sourced to set up indexing information for one or
# more commands.  Typically each line is a command that
# sets an element in the auto_index array, where the
# element name is the name of a command and the value is
# a script that loads the command.

set auto_index(RasterGlobals) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterEnter) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterLeave) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterMove) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterBindings) [list source [file join $dir seq_raster.tcl]]
set auto_index(raster_display_xh) [list source [file join $dir seq_raster.tcl]]
set auto_index(raster_xhinit) [list source [file join $dir seq_raster.tcl]]
set auto_index(raster_xhdel) [list source [file join $dir seq_raster.tcl]]
set auto_index(draw_raster_xh) [list source [file join $dir seq_raster.tcl]]
set auto_index(remove_raster_xh) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterPositionLabel) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterY) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterGetPos) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterStartShutdown) [list source [file join $dir seq_raster.tcl]]
set auto_index(removeRaster) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterResultsManager) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterHide) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterReveal) [list source [file join $dir seq_raster.tcl]]
set auto_index(RemoveWin) [list source [file join $dir seq_raster.tcl]]
set auto_index(init_crosshair) [list source [file join $dir seq_raster.tcl]]
set auto_index(GetRasterWinList) [list source [file join $dir seq_raster.tcl]]
set auto_index(GetRasterIdList) [list source [file join $dir seq_raster.tcl]]
set auto_index(GetRasterWindowSize) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterHRuler) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterVRuler) [list source [file join $dir seq_raster.tcl]]
set auto_index(raster_setvars) [list source [file join $dir seq_raster.tcl]]
set auto_index(RescaleRaster) [list source [file join $dir seq_raster.tcl]]
set auto_index(scrollXCmd) [list source [file join $dir seq_raster.tcl]]
set auto_index(scrollYCmd) [list source [file join $dir seq_raster.tcl]]
set auto_index(rulerTick_h) [list source [file join $dir seq_raster.tcl]]
set auto_index(rulerTick_v) [list source [file join $dir seq_raster.tcl]]
set auto_index(PlotTicks_h) [list source [file join $dir seq_raster.tcl]]
set auto_index(PlotTicks_v) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterScaleX) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterScaleY) [list source [file join $dir seq_raster.tcl]]
set auto_index(InitRasterColours) [list source [file join $dir seq_raster.tcl]]
set auto_index(MoveScaleBars) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterFrame) [list source [file join $dir seq_raster.tcl]]
set auto_index(AddRaster) [list source [file join $dir seq_raster.tcl]]
set auto_index(UpdateRasterPlot) [list source [file join $dir seq_raster.tcl]]
set auto_index(ConfigureRasterPlot) [list source [file join $dir seq_raster.tcl]]
set auto_index(ConfigureRasterWidth) [list source [file join $dir seq_raster.tcl]]
set auto_index(RasterConfig) [list source [file join $dir seq_raster.tcl]]
set auto_index(DropResult) [list source [file join $dir seq_raster.tcl]]
set auto_index(DropRaster) [list source [file join $dir seq_raster.tcl]]
set auto_index(WhereResult) [list source [file join $dir seq_raster.tcl]]
set auto_index(WhereRaster) [list source [file join $dir seq_raster.tcl]]
set auto_index(EnterKey) [list source [file join $dir seq_raster.tcl]]
set auto_index(LeaveKey) [list source [file join $dir seq_raster.tcl]]
set auto_index(EnterRaster) [list source [file join $dir seq_raster.tcl]]
set auto_index(MotionRaster) [list source [file join $dir seq_raster.tcl]]
set auto_index(LeaveRWin) [list source [file join $dir seq_raster.tcl]]
set auto_index(EnterRWin) [list source [file join $dir seq_raster.tcl]]
set auto_index(RemoveHighlightPosition) [list source [file join $dir seq_raster.tcl]]
set auto_index(HighlightPosition) [list source [file join $dir seq_raster.tcl]]
set auto_index(FindResultPosition) [list source [file join $dir seq_raster.tcl]]
set auto_index(UpdateScaleBars) [list source [file join $dir seq_raster.tcl]]
set auto_index(MoveRasterResult_Superimpose) [list source [file join $dir seq_raster.tcl]]
set auto_index(MoveRasterResult_New) [list source [file join $dir seq_raster.tcl]]
set auto_index(MoveRaster_Superimpose) [list source [file join $dir seq_raster.tcl]]
set auto_index(MoveRaster_Same) [list source [file join $dir seq_raster.tcl]]
set auto_index(MoveRaster_Different) [list source [file join $dir seq_raster.tcl]]
set auto_index(InitResultWindow) [list source [file join $dir seq_raster.tcl]]
set auto_index(InitRasterWindow) [list source [file join $dir seq_raster.tcl]]
set auto_index(GetRasterWindow) [list source [file join $dir seq_raster.tcl]]
set auto_index(SetRasterBinding) [list source [file join $dir seq_raster.tcl]]
set auto_index(ReSetRasterSize) [list source [file join $dir seq_raster.tcl]]
set auto_index(GetRasterId) [list source [file join $dir seq_raster.tcl]]
set auto_index(GetRasterStem) [list source [file join $dir seq_raster.tcl]]
set auto_index(GetRasterParent) [list source [file join $dir seq_raster.tcl]]
set auto_index(RemoveRasterResultKey) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterInitZoom) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterRescaleZoom) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterRescaleZoomOLD) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterZoom) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterZoomUndo) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterMark) [list source [file join $dir seq_raster.tcl]]
set auto_index(rasterStroke) [list source [file join $dir seq_raster.tcl]]
set auto_index(raster_zoominit) [list source [file join $dir seq_raster.tcl]]
set auto_index(update_zoom_list) [list source [file join $dir seq_raster.tcl]]
set auto_index(change_zoom_list) [list source [file join $dir seq_raster.tcl]]
set auto_index(UpdateKey) [list source [file join $dir seq_raster.tcl]]
set auto_index(MoveKey) [list source [file join $dir seq_raster.tcl]]
set auto_index(ConfigKey) [list source [file join $dir seq_raster.tcl]]
set auto_index(GetRasterResultSize) [list source [file join $dir seq_raster.tcl]]
set auto_index(CreateRasterWindow) [list source [file join $dir seq_raster.tcl]]
set auto_index(seq_rasterMenu1) [list source [file join $dir seq_raster.tcl]]
set auto_index(seq_rasterMenu) [list source [file join $dir seq_raster.tcl]]
set auto_index(keybox) [list source [file join $dir keybox.tcl]]
set auto_index(key_enter) [list source [file join $dir keybox.tcl]]
set auto_index(key_leave) [list source [file join $dir keybox.tcl]]
set auto_index(key_drop) [list source [file join $dir keybox.tcl]]
set auto_index(key_motion) [list source [file join $dir keybox.tcl]]
set auto_index(key_menu) [list source [file join $dir keybox.tcl]]
set auto_index(keybox_grid) [list source [file join $dir keybox.tcl]]
set auto_index(keybox_entryconf) [list source [file join $dir keybox.tcl]]
set auto_index(keybox_entryconfigure) [list source [file join $dir keybox.tcl]]
set auto_index(keybox_add) [list source [file join $dir keybox.tcl]]
set auto_index(keybox_delete) [list source [file join $dir keybox.tcl]]
set auto_index(keybox_entrycget) [list source [file join $dir keybox.tcl]]
set auto_index(keybox_size) [list source [file join $dir keybox.tcl]]
set auto_index(seq_result_list_create) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(seq_result_list_destroy) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(seq_result_list_update) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(get_result_id) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(result_list_popup_single) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(result_list_popup) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(seq_result_menu_update) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(seq_result_keybox_popup) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(seq_result_keybox_update) [list source [file join $dir seq_result_manager.tcl]]
set auto_index(seq_id_configure) [list source [file join $dir seq_id.tcl]]
set auto_index(CheckSequenceName) [list source [file join $dir seq_id.tcl]]
set auto_index(CheckSequence) [list source [file join $dir seq_id.tcl]]
set auto_index(CheckSeq) [list source [file join $dir seq_id.tcl]]
set auto_index(CheckSeqName) [list source [file join $dir seq_id.tcl]]
set auto_index(Fname_configure_ft) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_id) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_id_destroy) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_id_name) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_id_from) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_id_to) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_id_focus) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_id_trace) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_id_callback) [list source [file join $dir seq_id.tcl]]
set auto_index(UpdateSeqLimits) [list source [file join $dir seq_id.tcl]]
set auto_index(read_ft) [list source [file join $dir seq_id.tcl]]
set auto_index(seq_trans_update) [list source [file join $dir seq_id.tcl]]
set auto_index(SeqedDisplay_d) [list source [file join $dir seqed.tcl]]
set auto_index(SeqedDisplay_d2) [list source [file join $dir seqed.tcl]]
set auto_index(SeqedDisplay) [list source [file join $dir seqed.tcl]]
set auto_index(create_seqed) [list source [file join $dir seqed.tcl]]
set auto_index(create_seqed_menus) [list source [file join $dir seqed.tcl]]
set auto_index(seqed_quit) [list source [file join $dir seqed.tcl]]
set auto_index(SeqedSearch) [list source [file join $dir seqed.tcl]]
set auto_index(SeqedSearch2) [list source [file join $dir seqed.tcl]]
set auto_index(SeqedSearchShutdown) [list source [file join $dir seqed.tcl]]
set auto_index(SeqedSave) [list source [file join $dir seqed.tcl]]
set auto_index(SeqedSave2) [list source [file join $dir seqed.tcl]]
set auto_index(seqed_set_translate) [list source [file join $dir seqed.tcl]]
set auto_index(seqed_r_enz_dialogue) [list source [file join $dir seqed.tcl]]
set auto_index(seqed_r_enz_dialogueOLD) [list source [file join $dir seqed.tcl]]
set auto_index(seqed_renzbox_OK_Pressed) [list source [file join $dir seqed.tcl]]
set auto_index(display_seqed_info) [list source [file join $dir seqed.tcl]]
set auto_index(RasterCreateSeqPairDisp) [list source [file join $dir dot_raster.tcl]]
set auto_index(RasterMoveHCursor) [list source [file join $dir dot_raster.tcl]]
set auto_index(RasterMoveVCursor) [list source [file join $dir dot_raster.tcl]]
set auto_index(RasterMoveCursorDot) [list source [file join $dir dot_raster.tcl]]
set auto_index(DotBindingCommands) [list source [file join $dir dot_raster.tcl]]
set auto_index(CreateRasterDot) [list source [file join $dir dot_raster.tcl]]
set auto_index(rasterButtonsDot) [list source [file join $dir dot_raster.tcl]]
set auto_index(RasterCreateSeqed) [list source [file join $dir graph_raster.tcl]]
set auto_index(BindingCommandsGraph) [list source [file join $dir graph_raster.tcl]]
set auto_index(RasterMoveCursorGraph) [list source [file join $dir graph_raster.tcl]]
set auto_index(CreateRasterGraph) [list source [file join $dir graph_raster.tcl]]
set auto_index(rasterButtonsGraph) [list source [file join $dir graph_raster.tcl]]
set auto_index(ReplaceSeq) [list source [file join $dir sequence_manager.tcl]]
set auto_index(sequence_list_create) [list source [file join $dir sequence_manager.tcl]]
set auto_index(sequence_list_destroy) [list source [file join $dir sequence_manager.tcl]]
set auto_index(sequence_list_popup) [list source [file join $dir sequence_manager.tcl]]
set auto_index(SequenceTypeCascadeMenu) [list source [file join $dir sequence_manager.tcl]]
set auto_index(sequence_list_update) [list source [file join $dir sequence_manager.tcl]]
set auto_index(sequence_browse_seq) [list source [file join $dir sequence_manager.tcl]]
set auto_index(set_range_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(set_range_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(file_save_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(file_save_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(file_delete_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(file_delete_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(complement_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(complement_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(interconvert_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(interconvert_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(scramble_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(scramble_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(set_horizontal_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(set_horizontal_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(set_vertical_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(set_vertical_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(translate_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(translate_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(rotate_d) [list source [file join $dir sequence_manager.tcl]]
set auto_index(rotate_d2) [list source [file join $dir sequence_manager.tcl]]
set auto_index(RotateUpdate) [list source [file join $dir sequence_manager.tcl]]
set auto_index(seq_range_updates) [list source [file join $dir sequence_manager.tcl]]
set auto_index(seq_browser) [list source [file join $dir sequence_manager.tcl]]
set auto_index(sip_seq_browser) [list source [file join $dir sequence_manager.tcl]]
set auto_index(nip_seq_browser) [list source [file join $dir sequence_manager.tcl]]
set auto_index(SequencePairDisplay) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(seq_replot) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(seq_scroll) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(seq_scroll1) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(seq_scroll2) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(seq_scroll12) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(SeqPairRescaleSeqs) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(FindNearestMatch) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(scrollbar_view1) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(scrollbar_view2) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(scrollbar_move1) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(scrollbar_move2) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(CreateSequenceDisplay) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(SeqPairCursorSet1) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(SeqPairCursorSet2) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(SeqPairCursor) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(SeqDispStartShutdown) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(seq_disp_show_cursor) [list source [file join $dir sequence_pair_display.tcl]]
set auto_index(SeqActivateMenu_Open) [list source [file join $dir spin.tcl]]
set auto_index(SeqActivateMenu_Initial) [list source [file join $dir spin.tcl]]
set auto_index(SequenceManager) [list source [file join $dir spin.tcl]]
set auto_index(CreateSimpleBrowser) [list source [file join $dir spin.tcl]]
set auto_index(SimpleBrowser2) [list source [file join $dir spin.tcl]]
set auto_index(CreateLibBrowser) [list source [file join $dir spin.tcl]]
set auto_index(LoadSequences) [list source [file join $dir spin.tcl]]
set auto_index(CreatePersonalBrowser) [list source [file join $dir spin.tcl]]
set auto_index(LoadPersonalSequences) [list source [file join $dir spin.tcl]]
set auto_index(SeqCreateMainWin) [list source [file join $dir spin.tcl]]
set auto_index(StartSeqShutdown) [list source [file join $dir spin.tcl]]
set auto_index(seq_shutdown) [list source [file join $dir spin.tcl]]
set auto_index(seq_exit) [list source [file join $dir spin.tcl]]
set auto_index(PlotBaseComp) [list source [file join $dir base_comp.tcl]]
set auto_index(plot_base_comp) [list source [file join $dir base_comp.tcl]]
set auto_index(PlotBaseComp2) [list source [file join $dir base_comp.tcl]]
set auto_index(CountBaseComp) [list source [file join $dir base_comp.tcl]]
set auto_index(CountBaseComp2) [list source [file join $dir base_comp.tcl]]
set auto_index(scroll_x) [list source [file join $dir gap_canvas_box.tcl]]
set auto_index(scroll_y) [list source [file join $dir gap_canvas_box.tcl]]
set auto_index(ChangeScoreMatrix) [list source [file join $dir sip_options.tcl]]
set auto_index(ConfigMatches) [list source [file join $dir sip_options.tcl]]

set auto_index(NipTranslate) [list source [file join $dir nip_translation.tcl]]
set auto_index(NipTranslate2) [list source [file join $dir nip_translation.tcl]]
set auto_index(NipTrans_seq_updated) [list source [file join $dir nip_translation.tcl]]
set auto_index(GetSelectionFt) [list source [file join $dir nip_translation.tcl]]
set auto_index(SetAlignmentSymbols) [list source [file join $dir set_alignment_symbols.tcl]]
set auto_index(ChangeAlignmentSymbols) [list source [file join $dir set_alignment_symbols.tcl]]
set auto_index(FindWinLen) [list source [file join $dir gene_search.tcl]]
set auto_index(WinLenCheck) [list source [file join $dir gene_search.tcl]]
set auto_index(CheckWinLen) [list source [file join $dir gene_search.tcl]]
set auto_index(GeneSearchInputCheck) [list source [file join $dir gene_search.tcl]]
set auto_index(BaseBias) [list source [file join $dir gene_search.tcl]]
set auto_index(BaseBias2) [list source [file join $dir gene_search.tcl]]
set auto_index(plot_base_bias) [list source [file join $dir gene_search.tcl]]
set auto_index(GeneSearch_CTable) [list source [file join $dir gene_search.tcl]]
set auto_index(plot_codon_pref) [list source [file join $dir gene_search.tcl]]
set auto_index(plot_author_test) [list source [file join $dir gene_search.tcl]]
set auto_index(CodonPref) [list source [file join $dir gene_search.tcl]]
set auto_index(CodonPref2) [list source [file join $dir gene_search.tcl]]
set auto_index(AuthorTest) [list source [file join $dir gene_search.tcl]]
set auto_index(AuthorTest2) [list source [file join $dir gene_search.tcl]]
set auto_index(nip_canvas_cursor_create) [list source [file join $dir nip_canvas_box.tcl]]
set auto_index(nip_canvas_cursor_delete) [list source [file join $dir nip_canvas_box.tcl]]
set auto_index(nip_canvas_cursor_move) [list source [file join $dir nip_canvas_box.tcl]]
set auto_index(nip_canvas_cursor_drag) [list source [file join $dir nip_canvas_box.tcl]]
set auto_index(nip_canvas_cursor_editor) [list source [file join $dir nip_canvas_box.tcl]]
set auto_index(CodonUsage) [list source [file join $dir nip_codon_content.tcl]]
set auto_index(CodonUsage2) [list source [file join $dir nip_codon_content.tcl]]
set auto_index(CountDinucFreq) [list source [file join $dir nip_dinuc_freq.tcl]]
set auto_index(CountDinucFreq2) [list source [file join $dir nip_dinuc_freq.tcl]]
set auto_index(SetGeneticCode) [list source [file join $dir nip_genetic_code.tcl]]
set auto_index(SetGeneticCode2) [list source [file join $dir nip_genetic_code.tcl]]
set auto_index(SetGeneticCodeOLD) [list source [file join $dir nip_genetic_code.tcl]]
set auto_index(SetGeneticCode2OLD) [list source [file join $dir nip_genetic_code.tcl]]
set auto_index(TranslateFT) [list source [file join $dir nip_open_reading_frames.tcl]]
set auto_index(TranslateFT2) [list source [file join $dir nip_open_reading_frames.tcl]]
set auto_index(TranslateFasta) [list source [file join $dir nip_open_reading_frames.tcl]]
set auto_index(TranslateFasta2) [list source [file join $dir nip_open_reading_frames.tcl]]
set auto_index(NipRestrictionEnzymeDialogue) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(nip_scroll_x) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(nip_scroll_y) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(nip_zoom) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(nip_zoomback) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(nip_resize) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(NipCreateREnzDisplay) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(NipCreateREnzMenu) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(NipGetREnzResults) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(NipREnzStartShutdown) [list source [file join $dir nip_restriction_enzymes.tcl]]
set auto_index(SendTo) [list source [file join $dir nip_sendto.tcl]]
set auto_index(SendTo2) [list source [file join $dir nip_sendto.tcl]]
set auto_index(NipLoadSequence) [list source [file join $dir nip_sendto.tcl]]
set auto_index(EventHandler) [list source [file join $dir nip_sendto.tcl]]
set auto_index(NipStopCodons) [list source [file join $dir nip_stop_codon.tcl]]
set auto_index(plot_codons) [list source [file join $dir nip_stop_codon.tcl]]
set auto_index(NipStopCodon2) [list source [file join $dir nip_stop_codon.tcl]]
set auto_index(NipStartCodons) [list source [file join $dir nip_stop_codon.tcl]]
set auto_index(NipStartCodon2) [list source [file join $dir nip_stop_codon.tcl]]
set auto_index(NipStringSearch) [list source [file join $dir nip_string_search.tcl]]
set auto_index(plot_string) [list source [file join $dir nip_string_search.tcl]]
set auto_index(NipStringSearch2) [list source [file join $dir nip_string_search.tcl]]
set auto_index(NipWtMatrixSearch) [list source [file join $dir nip_wtmatrix_search.tcl]]
set auto_index(plot_wtmatrix) [list source [file join $dir nip_wtmatrix_search.tcl]]
set auto_index(NipWtMatrixSearch2) [list source [file join $dir nip_wtmatrix_search.tcl]]
set auto_index(SeqedSearchDialog) [list source [file join $dir seqed_search.tcl]]
set auto_index(SeqedSearch_string) [list source [file join $dir seqed_search.tcl]]
set auto_index(SeqedSearch_direction) [list source [file join $dir seqed_search.tcl]]
set auto_index(SeqedSearch_strand) [list source [file join $dir seqed_search.tcl]]
set auto_index(SeqedSearch_match) [list source [file join $dir seqed_search.tcl]]
set auto_index(SeqedSearch_use_iub) [list source [file join $dir seqed_search.tcl]]
set auto_index(SpliceSearch) [list source [file join $dir splice_search.tcl]]
set auto_index(plot_splice) [list source [file join $dir splice_search.tcl]]
set auto_index(SpliceSearch2) [list source [file join $dir splice_search.tcl]]
set auto_index(strand) [list source [file join $dir strand.tcl]]
set auto_index(strand_both) [list source [file join $dir strand.tcl]]
set auto_index(strand_get) [list source [file join $dir strand.tcl]]
set auto_index(trnaSearch) [list source [file join $dir trna_search.tcl]]
set auto_index(plot_trna_search) [list source [file join $dir trna_search.tcl]]
set auto_index(trnaSearch2) [list source [file join $dir trna_search.tcl]]
set auto_index(RescanOKPressed) [list source [file join $dir rescan_matches.tcl]]
set auto_index(sip_rescan_matches) [list source [file join $dir rescan_matches.tcl]]
set auto_index(CreateModeButton) [list source [file join $dir sequence_browser.tcl]]
set auto_index(GetMode) [list source [file join $dir sequence_browser.tcl]]
set auto_index(InvokeArchiveBrowser) [list source [file join $dir sequence_browser.tcl]]
set auto_index(InvokeLibBrowser) [list source [file join $dir sequence_browser.tcl]]
set auto_index(SipListBox) [list source [file join $dir sequence_browser.tcl]]
set auto_index(UpdateEntry) [list source [file join $dir sequence_browser.tcl]]
set auto_index(seq_entry) [list source [file join $dir sequence_browser.tcl]]
set auto_index(get_seq_entry) [list source [file join $dir sequence_browser.tcl]]
set auto_index(plot_global_align) [list source [file join $dir sip_align.tcl]]
set auto_index(AlignSeqs2) [list source [file join $dir sip_align.tcl]]
set auto_index(AlignUpdates) [list source [file join $dir sip_align.tcl]]
set auto_index(AlignSeqs) [list source [file join $dir sip_align.tcl]]
set auto_index(UpdateSipPlot) [list source [file join $dir sip_config.tcl]]
set auto_index(ConfigureSipPlot) [list source [file join $dir sip_config.tcl]]
set auto_index(ConfigureSipWidth) [list source [file join $dir sip_config.tcl]]
set auto_index(SipConfig) [list source [file join $dir sip_config.tcl]]
set auto_index(plot_matching_words) [list source [file join $dir sip_find_identity.tcl]]
set auto_index(Identities2) [list source [file join $dir sip_find_identity.tcl]]
set auto_index(IdentityUpdates) [list source [file join $dir sip_find_identity.tcl]]
set auto_index(SipIdentities) [list source [file join $dir sip_find_identity.tcl]]
set auto_index(plot_local_align) [list source [file join $dir sip_sim.tcl]]
set auto_index(SimAlign2) [list source [file join $dir sip_sim.tcl]]
set auto_index(SimUpdates) [list source [file join $dir sip_sim.tcl]]
set auto_index(SimAlign) [list source [file join $dir sip_sim.tcl]]
set auto_index(plot_best_diagonals) [list source [file join $dir sip_quick_scan.tcl]]
set auto_index(QuickScan2) [list source [file join $dir sip_quick_scan.tcl]]
set auto_index(QuickScanUpdates) [list source [file join $dir sip_quick_scan.tcl]]
set auto_index(QuickScan) [list source [file join $dir sip_quick_scan.tcl]]
set auto_index(SendTo) [list source [file join $dir sip_sendto.tcl]]
set auto_index(SendTo2) [list source [file join $dir sip_sendto.tcl]]
set auto_index(LoadSequence) [list source [file join $dir sip_sendto.tcl]]
set auto_index(EventHandler) [list source [file join $dir sip_sendto.tcl]]
set auto_index(CheckSequenceTypes) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(CreateSeqArray) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(plot_similar_spans) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(CompSpans2) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(GetType) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(GetSeqTypes) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(SeqNameUpdates) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(WinLenUpdates) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(CompareSpans) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(update_score) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(winlen_minscore) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(SipFindScore) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(UpdateMinScore) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(CheckMinScore) [list source [file join $dir sip_similar_spans.tcl]]
set auto_index(xcomborange) [list source [file join $dir comborange.tcl]]
